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• Bibhudutta Mishra, Pranav Ballaney, Gourav Saha, Akshay Shinde, Subhadeep Banerjee, Venkatesan S. Thimmakondu & Raviprasad Aduri  An in silico discovery of potential 3CL protease inhibitors of SARS-CoV-2 based upon inactivation of the cysteine 145-Histidine 41 catalytic dyad, Journal of Biomolecular Structure and Dynamics (2023), 10.1080/07391102.2022.2047108
• Balakumar, M., Vontela, H.R., Shinde, V.V. et al. Dengue outbreak and severity prediction: current methods and the future scope. VirusDisease. (2022), 10.1007/s13337-022-00767-x
• A. A. Phadte, P. Bhavana, S. Ghosal, R. Aduri,  S. Banerjee,       ChemistrySelect (2022),    https://doi.org/10.1002/slct.202200492. 
• Subhadeep Banerjee, Apeksha Ashok Phadte, Moitreyi Das, Raviprasad Aduri & Arnab Banerjee  A Biophysical Investigation of DNA-Binding Interactions of Push-Pull Dibenzodioxins and Implications for in Vitro anti-Cancer Activity, Polycyclic Aromatic Compounds (2022), 10.1080/10406638.2022.2078846
• Dhatterwal P, Mehrotra S, Miller AJ, Aduri R, Mehrotra R. Effect of ACGT motif in spatiotemporal regulation of AtAVT6D, which improves tolerance to osmotic stress and nitrogen-starvation. Plant Mol Biol. (2022) 10.1007/s11103-022-01256-x. 
• Mishra, B., Aduri, R. The RNA Secondary Structure Analysis Reveals Potential for Emergence of Pathogenic Flaviviruses. Food Environ Virol (2021). 10.1007/s12560-021-09502-z
• T. Prashanth et al., "LipGene: Lipschitz continuity guided adaptive learning rates for fast convergence on Microarray Expression Data Sets," in IEEE/ACM Transactions on Computational Biology and Bioinformatics (2021), 10.1109/TCBB.2021.3110516.
• Louis, J.M., Agarwal, A., Aduri, R. and Talukdar, I., Global analysis of RNA–protein interactions in TNF‐α induced alternative splicing in metabolic disorders. FEBS Lett. (2021) 10.1002/1873-3468.14029
• S. R. Gupte, D. S. Jain, A. Srinivasan and R. Aduri, "MP3vec: A Reusable Machine-Constructed Feature Representation for Protein Sequences," 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Seoul, Korea (South), (2020), pp. 421-425, 10.1109/BIBM49941.2020.9313301.
• Mishra B, Balaji A, Beesetti H, Swaminathan S,  Aduri R., The RNA secondary structural variation in the cyclization elements of the dengue genome and the possible implications in pathogenicity. VirusDisease (2020)., 31, pp.299-307.
• Mishra, B., Raghuraman, R., Agarwal, A. and Aduri, R., Finding small molecules with pan-serotype activity to target Dengue non-structural protein 1. VirusDisease (2019). 30, pp.477-489.
• Banerjee, S., Talukdar, I., Banerjee, A., Gupta, A., Balaji, A. and Aduri, R., Type II diabetes mellitus and obesity: Common links, existing therapeutics and future developments. Journal of Biosciences, (2019). 44(6), p.150.
• Jain D, Gupte S, Aduri R. "A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine" (2018) Sci. Rep. 8:9552 (DOI: 10.1038/s41598-018-27814-2)
• Aduri R. Editorial: "To be Read or Not” (2014) Enliven: Microb. Microbial Tech. 1: e1.
• Jiang J, Aduri R, Chow CS, SantaLucia J Jr. “Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by psedouridylations” Nucleic Acids Res. (2014) 42: 3971-81.
• Aduri R, Briggs KT, Gorelick RJ, and Marino JP. “Molecular determinants of HIV-1 NCp7 chaperone activity in maturation of the HIV-1 dimerization initiation site” Nucleic Acids Res. (2013) 41: 2565-80.
• Desauliniers J, Chang Y, Aduri R, Abeysirigunawardena S, SantaLucia J Jr, Chow CS. “Pseudouridines in rRNA helix69 play a role in loop stacking interactions” Org. Biomol. Chem. (2008) 6: 3892-95.
• Aduri R, Brian TP, Pirro S, Hariprakash T, Bernard HS, SantaLucia J Jr. “AMBER force field parameters for naturally occurring modified nucleosides in RNA” J. Chem. Theory Comput. (2007) 3: 1464-75.
• Shivaji S, Reddy GS, Aduri R, Kutty R, Ravenschlag K. "Bacterial diversity of a soil sample from Schimacher Oasis, Antarctica" Cell Mol. Biol. (2004) 50: 525-36.